PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00332.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 157aa    MW: 17233.5 Da    PI: 8.7338
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00332.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB130.65.5e-4163153292
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                       r+ d+++Pian++r m++vlP++a+i++dake +qec+sefisf+t+ea+ +c+++ r+t++++d+l a+a+lGf++y+epl+v+l+++r 
  Migut.O00332.1.p  63 RDADQYMPIANITRTMRRVLPTHARIADDAKEAIQECISEFISFITAEANRRCHNDYRRTVTPEDVLAAMASLGFNNYLEPLTVFLTNHRA 153
                       789************************************************************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-3958154IPR009072Histone-fold
SuperFamilySSF471136.37E-3166153IPR009072Histone-fold
PfamPF008084.2E-2168132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-1396114No hitNo description
PRINTSPR006154.8E-13115133No hitNo description
PRINTSPR006154.8E-13134152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEKGGSSNIG HKYTRRAHTS GIVIRERGTA PAIAGPNAAN IVAAPPNAVV GEVNLEHQQG  60
FKRDADQYMP IANITRTMRR VLPTHARIAD DAKEAIQECI SEFISFITAE ANRRCHNDYR  120
RTVTPEDVLA AMASLGFNNY LEPLTVFLTN HRAHNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-3463152392NF-YB
4awl_B1e-3463152493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-3463152493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839450.12e-93PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ9SFD83e-41NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A022QBY06e-74A0A022QBY0_ERYGU; Uncharacterized protein
STRINGVIT_19s0015g00580.t011e-39(Vitis vinifera)
STRINGfgenesh2_kg.1__2386__AT1G21970.11e-39(Arabidopsis lyrata)
STRINGscaffold_102467.11e-39(Arabidopsis lyrata)
STRINGscaffold_102469.11e-39(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.13e-42NF-YB family protein